{
  "_id": "6a1d75681d7bb097a0a51863",
  "Package": "EMMIXgene",
  "Type": "Package",
  "Version": "0.1.4",
  "Title": "A Mixture Model-Based Approach to the Clustering of Microarray\nExpression Data",
  "Description": "Provides unsupervised selection and clustering of\nmicroarray data using mixture models. Following the methods\ndescribed in McLachlan, Bean and Peel (2002)\n<doi:10.1093/bioinformatics/18.3.413> a subset of genes are\nselected based one the likelihood ratio statistic for the test\nof one versus two components when fitting mixtures of\nt-distributions to the expression data for each gene. The\ndimensionality of this gene subset is further reduced through\nthe use of mixtures of factor analyzers, allowing the tissue\nsamples to be clustered by fitting mixtures of normal\ndistributions.",
  "Encoding": "UTF-8",
  "Authors@R": "c(person(given = \"Andrew Thomas\", family = \"Jones\", \nemail = \"andrewthomasjones@gmail.com\",\nrole = c(\"aut\", \"cre\")))",
  "Maintainer": "Andrew Thomas Jones <andrewthomasjones@gmail.com>",
  "License": "GPL (>= 3)",
  "LazyData": "TRUE",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-01 11:58:32 UTC",
    "User": "root"
  },
  "Author": "Andrew Thomas Jones [aut, cre]",
  "Repository": "https://andrewthomasjones.r-universe.dev",
  "Date/Publication": "2024-01-22 02:43:14 UTC",
  "RemoteUrl": "https://github.com/cran/EMMIXgene",
  "RemoteRef": "HEAD",
  "RemoteSha": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
  "MD5sum": "3645c9b8f60142f4bd5bb349072ea2b7",
  "_user": "andrewthomasjones",
  "_type": "src",
  "_file": "EMMIXgene_0.1.4.tar.gz",
  "_fileid": "3ea9ac12d34fee76926e8d5e0287162e3c13a6cf25a43c24eb65db6139a590ad",
  "_filesize": 1884996,
  "_sha256": "3ea9ac12d34fee76926e8d5e0287162e3c13a6cf25a43c24eb65db6139a590ad",
  "_created": "2026-06-01T11:58:32.000Z",
  "_published": "2026-06-01T12:04:56.694Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78847300654,
      "time": 200,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7330916302"
    },
    {
      "job": 78847300717,
      "time": 164,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7330903766"
    },
    {
      "job": 78847300689,
      "time": 174,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330906563"
    },
    {
      "job": 78847300690,
      "time": 145,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330897151"
    },
    {
      "job": 78847300697,
      "time": 116,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7330887085"
    },
    {
      "job": 78847300739,
      "time": 264,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7330937306"
    },
    {
      "job": 78847300685,
      "time": 125,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330890015"
    },
    {
      "job": 78847300682,
      "time": 323,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330956315"
    },
    {
      "job": 78846586114,
      "time": 262,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330848158"
    },
    {
      "job": 78847300613,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330891505"
    },
    {
      "job": 78847300652,
      "time": 180,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7330905433"
    },
    {
      "job": 78847300670,
      "time": 227,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7330925199"
    },
    {
      "job": 78847300883,
      "time": 181,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330909128"
    }
  ],
  "_buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/EMMIXgene",
  "_commit": {
    "id": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
    "author": "Andrew Thomas Jones <andrewthomasjones@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.4\n",
    "time": 1705891394
  },
  "_maintainer": {
    "name": "Andrew Thomas Jones",
    "email": "andrewthomasjones@gmail.com",
    "login": "andrewthomasjones",
    "description": "Stats, ML, R, C++",
    "uuid": 15768984
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "mclust",
      "role": "Imports"
    },
    {
      "package": "reshape",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "andrewthomasjones",
      "count": 5,
      "uuid": 15768984
    }
  ],
  "_userbio": {
    "uuid": 15768984,
    "type": "user",
    "name": "Andrew Jones",
    "description": "Stats, ML, R, C++"
  },
  "_downloads": {
    "count": 189,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EMMIXgene"
  },
  "_searchresults": 9,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EMMIXgene.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "andrewthomasjones",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2018-04-03"
    },
    {
      "version": "0.1.1",
      "date": "2019-01-04"
    },
    {
      "version": "0.1.2",
      "date": "2020-02-09"
    },
    {
      "version": "0.1.3",
      "date": "2020-03-23"
    },
    {
      "version": "0.1.4",
      "date": "2024-01-21"
    }
  ],
  "_exports": [
    "all_cluster_tissues",
    "cluster_genes",
    "cluster_tissues",
    "heat_maps",
    "plot_single_gene",
    "select_genes",
    "top_genes_cluster_tissues"
  ],
  "_datasets": [
    {
      "name": "alon_data",
      "title": "Normalized gene expression values from Alon et al. (1999).",
      "object": "alon_data",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21",
        "V22",
        "V23",
        "V24",
        "V25",
        "V26",
        "V27",
        "V28",
        "V29",
        "V30",
        "V31",
        "V32",
        "V33",
        "V34",
        "V35",
        "V36",
        "V37",
        "V38",
        "V39",
        "V40",
        "V41",
        "V42",
        "V43",
        "V44",
        "V45",
        "V46",
        "V47",
        "V48",
        "V49",
        "V50",
        "V51",
        "V52",
        "V53",
        "V54",
        "V55",
        "V56",
        "V57",
        "V58",
        "V59",
        "V60",
        "V61",
        "V62"
      ],
      "rows": 2000,
      "table": true,
      "tojson": true
    },
    {
      "name": "golub_data",
      "title": "Normalized gene expression values from Golub et al. (1999).",
      "object": "golub_data",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21",
        "V22",
        "V23",
        "V24",
        "V25",
        "V26",
        "V27",
        "V28",
        "V29",
        "V30",
        "V31",
        "V32",
        "V33",
        "V34",
        "V35",
        "V36",
        "V37",
        "V38",
        "V39",
        "V40",
        "V41",
        "V42",
        "V43",
        "V44",
        "V45",
        "V46",
        "V47",
        "V48",
        "V49",
        "V50",
        "V51",
        "V52",
        "V53",
        "V54",
        "V55",
        "V56",
        "V57",
        "V58",
        "V59",
        "V60",
        "V61",
        "V62",
        "V63",
        "V64",
        "V65",
        "V66",
        "V67",
        "V68",
        "V69",
        "V70",
        "V71",
        "V72"
      ],
      "rows": 3731,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "all_cluster_tissues",
      "title": "Clusters tissues using all group means",
      "topics": [
        "all_cluster_tissues"
      ]
    },
    {
      "page": "alon_data",
      "title": "Normalized gene expression values from Alon et al. (1999).",
      "topics": [
        "alon_data"
      ]
    },
    {
      "page": "cluster_genes",
      "title": "Clusters genes using mixtures of normal distributions",
      "topics": [
        "cluster_genes"
      ]
    },
    {
      "page": "cluster_tissues",
      "title": "Clusters tissues",
      "topics": [
        "cluster_tissues"
      ]
    },
    {
      "page": "EMMIXgene",
      "title": "EMMIXgene:",
      "topics": [
        "EMMIXgene"
      ]
    },
    {
      "page": "golub_data",
      "title": "Normalized gene expression values from Golub et al. (1999).",
      "topics": [
        "golub_data"
      ]
    },
    {
      "page": "heat_maps",
      "title": "Heat maps",
      "topics": [
        "heat_maps"
      ]
    },
    {
      "page": "plot_single_gene",
      "title": "Plot a single gene expression histogram with best fitted mixture of t-distributions.",
      "topics": [
        "plot_single_gene"
      ]
    },
    {
      "page": "select_genes",
      "title": "Selects genes using the EMMIXgene algorithm.",
      "topics": [
        "select_genes"
      ]
    },
    {
      "page": "top_genes_cluster_tissues",
      "title": "Cluster tissues",
      "topics": [
        "top_genes_cluster_tissues"
      ]
    }
  ],
  "_readme": "https://github.com/cran/EMMIXgene/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "mclust",
    "plyr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "reshape",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "emmixgene",
  "_universes": [
    "andrewthomasjones"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-06-01T12:01:29.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "c35cde326662a183b9b262c4e88dc343710a2eb51b8d5084d7b962ed18d7a1e9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-06-01T12:01:06.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "a2f15a4b3a61644320ea44aa31c22306abfb121883e7607b2fae24da9a1e7396",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-06-01T12:01:01.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "dc359f277d3da3fe62c46678d9e1c9df0c02e86d9699c372f1b2eb3fc28e3aec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:51.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "8b43703321b3703c3810520107ebfca02c38329d79aa30e14ee5a83a18d39c6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:30.000Z",
      "arch": "aarch64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "b20c8c266744b6f1a45ef3892849a35080229bb9fe7c92c95d5c02156bf44070",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-06-01T12:02:12.000Z",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "bcfae28b1d732d3ef9f748a190a740d3a944e7fd8111cea58c52a1693c694818",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:36.000Z",
      "arch": "aarch64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "a3118df88cf2c2459584e693c735dfd568cd43e0f4150d43b24b1fd62eff4516",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-06-01T12:02:45.000Z",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "37261c0cfbd4d9cf2d9f56130a89394d6c1513171d31e8305b62280be78f04ff",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.4",
      "date": "2026-06-01T12:01:07.000Z",
      "arch": "emscripten",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "a6abeb677e0df00f7301dc8879b07efa992b74eeeea27840e5c3a7abe2921a05",
      "status": "success",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:27.000Z",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "30fe6cc40c40fddd040c60d310f52101f12c2cc51ce499a0fcec391a8045f742",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:46.000Z",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "75a4e036845746d162c96108dd8377ba4abb485cff6e35578f1b53e9b5fbdabe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-06-01T12:00:47.000Z",
      "arch": "x86_64",
      "commit": "1ac8dc57139fdb2d7b2971622933f0ddaea5cfe8",
      "fileid": "07d537895d8791aa13d6bb64b35750ab32057e9815f983f11eba914674bc0228",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/andrewthomasjones/actions/runs/26753295979"
    }
  ]
}